System Architecture¶

1. AOBench App — Component Map¶

src/aobench/
├── cli/               CLI commands (typer app)
│   ├── main.py        Entry point — registers all sub-commands
│   ├── run_cmd.py     aobench run task / run all
│   ├── validate_cmd.py aobench validate benchmark
│   ├── report_cmd.py  aobench report json / html / slices
│   ├── compare_cmd.py aobench compare
│   ├── robustness_cmd.py aobench robustness task / all
│   ├── clear_cmd.py   aobench clear run
│   └── lite_cmd.py    aobench lite select
│
├── schemas/           Pydantic data models (no logic)
│   ├── task.py        TaskSpec, HPCTaskSpec, HPCRoleVariant, EvalCriteria, HybridScoringConfig
│   ├── trace.py       Trace, TraceStep, ToolCall, Observation, BenchmarkResult
│   ├── snapshot.py    SlurmState, SlurmJob, SlurmNode, IncidentMetadata, EnvBundle
│   └── trace_annotation.py  ErrorAnnotation, TraceAnnotation, HolisticScores
│
├── loaders/           Data loading (stateless functions)
│   └── task_loader.py Load TaskSpec + HPCTaskSpec from JSON; RAG context builder
│
├── tasks/             Dataset management
│   ├── task_loader.py Load task by ID from benchmark/tasks/specs/
│   ├── context_builder.py Build RAG context string for HPC task set v1
│   └── dataset_splits.py  split manifest (62 dev / 18 test tasks, ~22% held-out)
│
├── environment/       Environment snapshot system
│   ├── snapshot_loader.py   Build ToolRegistry from EnvBundle
│   └── snapshot_validator.py  validate_bundle() — JSON schema checks
│
├── tools/             Mock HPC tool implementations
│   ├── slurm_tool.py       MockSlurmTool (query_jobs, job_details, cancel_job, etc.)
│   ├── docs_tool.py        MockDocsTool (retrieve)
│   ├── rbac_tool.py        MockRBACTool (get_allowed_tools, check_permission)
│   ├── telemetry_tool.py   MockTelemetryTool (query_timeseries, query_node_metrics)
│   ├── facility_tool.py    MockFacilityTool (get_power_usage, set_power_cap)
│   ├── registry.py         ToolRegistry — role-filtered tool dispatch
│   └── catalog_loader.py   Load hpc_tool_catalog.yaml → tool schema dict
│
├── adapters/          Agent backend adapters
│   ├── base.py             BaseAdapter interface (run(task, context) → Trace)
│   ├── direct_qa_adapter.py DirectQA — zero-tool baseline
│   ├── openai_adapter.py   OpenAIAdapter — GPT-4o, GPT-4o-mini, o1 (plain + Azure)
│   ├── anthropic_adapter.py AnthropicAdapter — Claude (native tool_use blocks)
│   └── mcp_adapter.py      MCPClientAdapter — stdio + SSE transports
│
├── runners/           Execution orchestration
│   ├── runner.py      BenchmarkRunner.run_task() — full pipeline per task
│   ├── trace_writer.py TraceWriter — append steps, tool calls to Trace
│   └── context.py     ExecutionContext dataclass
│
├── scorers/           Scoring engine (12 scorers)
│   ├── aggregate.py   AggregateScorer — orchestrates all dimensions
│   ├── outcome_scorer.py    OutcomeScorer
│   ├── tool_use_scorer.py   ToolUseScorer (BFCL-decomposed)
│   ├── grounding_scorer.py  GroundingScorer
│   ├── governance_scorer.py GovernanceScorer (RBAC hard-fail)
│   ├── efficiency_scorer.py EfficiencyScorer
│   ├── robustness_scorer.py compute_pass_k, compute_robustness_suite
│   ├── hybrid_scorer.py     HybridScorer (routes deterministic vs rubric)
│   ├── deterministic.py     DAComp three-tier (CS / CFS / SR)
│   ├── rubric_scorer.py     LLM-judge rubric scoring
│   ├── gsb_scorer.py        Good-Same-Bad comparative scoring
│   ├── checkpoint_scorer.py Checkpoint partial-credit scoring
│   ├── workflow_scorer.py   WorfEvalScorer — workflow DAG matching
│   └── error_annotator.py   TRAIL-adapted HPC error taxonomy (14 categories)
│
├── reports/           Output generation
│   ├── clear_report.py      CLEAR five-dimension scorecard (E/A/R/C/L)
│   ├── json_report.py       Full JSON result dump
│   ├── html_report.py       Self-contained HTML report
│   └── slice_report.py      Role × QCAT stratification slices
│
├── exporters/
│   └── langfuse_exporter.py Optional Langfuse observability export
│
├── taxonomy/
│   └── hpc_error_taxonomy.yaml  24-leaf TRAIL-adapted error taxonomy
│
└── utils/
    ├── logging.py     get_logger(), configure_logging()
    ├── cost.py        estimate_cost(model, prompt_tokens, completion_tokens)
    └── ids.py         make_trace_id(), make_run_id()

2. Dataset & Benchmark Data¶

benchmark/
├── tasks/
│   ├── specs/          80 task JSON files across all 10 QCATs × 5 roles
│   ├── task_set_v1.json  36 HPC task set v1 tasks (HPCTaskSpec format)
│   ├── task_set_v3.json  v3 task index (80 tasks)
│   ├── dataset_splits.py 62 dev / 18 test split (~22% held-out, frozen 2026-05-02)
│   ├── guidelines/     6 domain guideline files for task set v1
│   └── lite_manifest_v1.json  AOBench-Lite task subset
│
├── environments/
│   └── env_01/ … env_26/   26 snapshot bundles, each with:
│       ├── slurm_state.json     SLURM jobs, nodes, partitions
│       ├── incident_metadata.json  Active incidents
│       ├── rbac_policy.yaml     Role permissions (v1.1, 5 roles)
│       └── telemetry/           Parquet files for timeseries/node metrics
│
├── configs/
│   ├── hpc_tool_catalog.yaml    16 tool methods, role visibility, dangerous_args
│   ├── scoring_profiles.yaml    Named weight profiles
│   └── error_taxonomy.yaml      Score-based error categories (14)
│
└── qa/                  Embedded AOBench-QA dataset (~95 queries)

Delivered scope:

Item	v0.1 baseline	v0.3 (current)
Tasks	66 (30 original + 36 HPC v1)	71 (+ PERF/DATA/SEC/FAC/ARCH/AIOPS/DOCS tasks)
Environments	20 snapshot bundles (env_01–env_20)	26 snapshot bundles (env_01–env_26)
Roles (scored)	3 (`scientific_user`, `sysadmin`, `facility_admin`)	5 (all roles, incl. `researcher`, `system_designer`)
QCATs (scored)	3 (`JOB`, `MON`, `ENERGY`)	10 (all QCATs)
Adapters	4 implemented (`direct_qa`, `openai`, `anthropic`, `mcp`)	4
Scorers	12 scorers across 7 dimensions	13 scorers (+ WorfEvalScorer)
CLI commands	9+ commands	9+ commands

3. End-to-End Execution Flow¶

aobench run task --task JOB_USR_001 --env env_01 --adapter openai:gpt-4o

CLI (run_cmd.py)
│
├─ 1. Load TaskSpec from benchmark/tasks/specs/JOB_USR_001.json
│      task_loader.load_task(task_id) → TaskSpec
│
├─ 2. Load EnvBundle from benchmark/environments/env_01/
│      snapshot_loader.load_environment(env_id) → EnvBundle
│      snapshot_validator.validate_bundle(bundle) → raises on schema error
│
├─ 3. Build ToolRegistry (role-filtered)
│      snapshot_loader.build_tool_registry(bundle, role=task.role)
│      → ToolRegistry with allowed methods per role
│
├─ 4. Select Adapter
│      _build_adapter("openai:gpt-4o") → OpenAIAdapter(model="gpt-4o")
│
├─ 5. BenchmarkRunner.run_task(task, env_bundle, adapter)
│   │
│   ├─ 5a. Build prompt: task.query_text + role + tool schemas
│   │
│   ├─ 5b. adapter.run(task, tool_registry, execution_context) [loop ≤10 rounds]
│   │        For each LLM response:
│   │        ├─ If tool_call → ToolRegistry.dispatch(tool_name, args)
│   │        │   ├─ RBAC check → permission_denied if not allowed
│   │        │   └─ Tool method returns observation (JSON)
│   │        ├─ TraceWriter.append_step(step)
│   │        └─ If stop_reason=stop → exit loop
│   │
│   ├─ 5c. TraceWriter.finalize() → Trace
│   │        Contains: steps[], final_answer, hard_fail,
│   │                  model_name, prompt_tokens, completion_tokens
│   │
│   └─ 5d. AggregateScorer.score(task, trace) → BenchmarkResult
│             [see Section 5: Scoring Pipeline]
│
├─ 6. Persist results
│      data/runs/<run_id>/
│      ├── <task_id>_result.json     BenchmarkResult
│      ├── <task_id>_trace.json      Full Trace
│      └── manifest.json             Model, date, split, commit hash
│
└─ 7. Optional: Langfuse export (--langfuse flag)
       langfuse_exporter.export(trace, result) → post to Langfuse server

4. Scoring Pipeline¶

Trace + TaskSpec
│
├─ OutcomeScorer          → score ∈ [0,1]
│  Mode routing:
│  • exact_match: case-insensitive string equality
│  • numeric: ±5% relative tolerance
│  • semantic_match: 60% rapidfuzz + 40% numeric blend
│  NOTE: If task.hybrid_scoring is set, HybridScorer replaces this.
│
├─ HybridScorer (optional, replaces OutcomeScorer)
│  ├─ deterministic path: DAComp CS/CFS/SR
│  │   CS = weighted component partial credit
│  │   CFS = cascading failure (upstream errors nullify downstream)
│  │   SR = strict all-or-nothing (outcome used = SR)
│  └─ rubric path: LLM judge → score_rubric
│      + optional GSB: α·score_rubric + (1−α)·score_gsb
│
├─ ToolUseScorer          → score ∈ [0,1]  +  tool_use_detail
│  Decomposed (BFCL-style) when expected_tool_sequence set:
│  • selection_score = |expected ∩ actual| / |expected|
│  • argument_score = per-arg match (±5% numeric, exact string)
│  • sequence_score = LCS(expected, actual) / |expected|
│  • forbidden_call_penalty = 1.0 − 0.3 × |disallowed calls|
│  With gold_trajectory: upgrades to 0.5×base + 0.3×NED + 0.2×F1
│
├─ GroundingScorer        → score ∈ [0,1]
│  Key token overlap: answer_tokens ∩ observation_tokens / answer_tokens
│  Key tokens: multi-digit numbers, HPC entities (node*, gpu*), status words
│
├─ GovernanceScorer       → score ∈ [0,1]  +  ViolationVector
│  Hard-fail triggers:
│  • trace.hard_fail (permission_denied propagated from tool)
│  • dangerous_args matched against hpc_tool_catalog.yaml conditions
│  Penalties: FORBIDDEN_CALL_PENALTY=0.50, PERMISSION_DENIED=0.25
│  rbac_compliant = True iff score == 1.0
│
├─ EfficiencyScorer       → score ∈ [0,1]
│  Linear: ≤5 steps → 1.0, ≥20 steps → 0.0
│
├─ [Optional] CheckpointScorer  → s_partial, s_full
│  4 evaluator types: tool_call_present, response_contains_gt,
│                     no_forbidden_calls, tool_call_with_metric
│  S_partial = 0.5×(checkpoints_passed/total) + 0.5×S_full
│
└─ AggregateScorer (orchestrator)
   ├─ effective_outcome = s_partial if checkpoints else outcome_score
   ├─ CuP gating: cup_score penalized by ViolationVector
   ├─ Weight profile (from scoring_profiles.yaml):
   │   default_hpc_v01:
   │   outcome=0.30, tool_use=0.20, grounding=0.15,
   │   governance=0.20, robustness=0.10, efficiency=0.05
   ├─ aggregate_score = Σ(weight_i × dim_i)
   └─ IF hard_fail=True → aggregate_score forced to 0.0

Output: BenchmarkResult
├─ dimension_scores: {outcome, tool_use, grounding, governance, efficiency}
├─ aggregate_score (0–1, 0.0 if hard_fail)
├─ hard_fail, hard_fail_reason
├─ rbac_compliant (bool)
├─ cup_score (CuP-gated efficacy)
├─ violation_vector (6 boolean flags)
├─ tool_use_detail (ToolUseResult with sub-scores)
├─ checkpoint_results, s_partial, s_full
└─ cost_estimate_usd, latency_seconds, model_name, token counts

5. CLEAR Scorecard¶

Computed by reports/clear_report.py across all results for a run.

Per model, from BenchmarkResult[]:

E  — Efficacy     = mean(outcome or s_partial)                  ∈ [0,1]
A  — Assurance    = fraction(rbac_compliant == True)             ∈ [0,1]
R  — Reliability  = mean(pass^k) across tasks (k=8 default)     ∈ [0,1]
    pass^k = ∏ᵢ (c−i)/(n−i) for i in 0..k−1
    where c = passing runs, n = total runs, pass_threshold=0.7

C  — Cost         = cost_estimate_usd, min-max normalised, inverted
L  — Latency      = latency_seconds, min-max normalised, inverted

CLEAR = 0.2·C_norm + 0.2·L_norm + 0.2·E + 0.2·A + 0.2·R

Additional metrics per model:
CNA = (outcome / cost_usd) × 100    [Cost-Normalised Accuracy]
CPS = total_cost / n_successful      [Cost Per Success]
cup = mean(cup_score)               [CuP-gated efficacy]
cup_gap = completion_rate − cup     [RBAC compliance gap]
risk_ratios = per-violation-flag fractions from violation_vector

v0.1 results (dev split, 21 tasks):

Model	E	A	R	CLEAR	Notes
direct_qa	0.337	1.000	0.000	0.324	Zero tool use; A=1.0 trivially
GPT-4o	0.517	0.000	—	—	A=0.000: RBAC failure on all tool episodes

6. Scorer Reference Table¶

Scorer	File	Dimension	LLM Required	Wired in AggregateScorer
OutcomeScorer	outcome_scorer.py	outcome	No	Yes
HybridScorer	hybrid_scorer.py	outcome (replaces above)	Optional	Yes (if hybrid_scoring set)
→ DeterministicScorer	deterministic.py	outcome via Hybrid	No	Via Hybrid
→ RubricScorer	rubric_scorer.py	outcome via Hybrid	Yes	Via Hybrid
→ GSBScorer	gsb_scorer.py	outcome via Hybrid	Yes	Via Hybrid
ToolUseScorer	tool_use_scorer.py	tool_use	No	Yes
GroundingScorer	grounding_scorer.py	grounding	No	Yes
GovernanceScorer	governance_scorer.py	governance	No	Yes
EfficiencyScorer	efficiency_scorer.py	efficiency	No	Yes
CheckpointScorer	checkpoint_scorer.py	outcome (s_partial)	No	Yes (if task.checkpoints)
RobustnessScorer	robustness_scorer.py	R in CLEAR	No	Via CLI robustness cmd
ErrorAnnotator	error_annotator.py	post-hoc taxonomy	Yes (semantic)	Not wired (standalone)
WorfEvalScorer	workflow_scorer.py	workflow DAG	No	Not yet wired

7. Role × QCAT × Environment Coverage¶

5 scored roles:

Role	SLURM access	Telemetry	RBAC	Facility
scientific_user	Own jobs only	Own node only	Read own	No
sysadmin	All jobs + nodes	All nodes	Read + write	Partial
facility_admin	All + cluster-wide	All + energy	Full	Full
researcher	Own + project group	Aggregate + own project	Read own	No
system_designer	All (capacity planning)	All (design scope)	Read all	Design scope

10 scored QCATs:

QCAT	Task focus	Tools primarily used
JOB	Job submission, status, failure diagnosis	slurm, docs, rbac
MON	Node health, telemetry, incident response	telemetry, slurm, docs
ENERGY	Power usage, efficiency, facility controls	telemetry, facility, rbac
PERF	Profiling, bottlenecks, scaling studies	telemetry, slurm, docs
DATA	Filesystems, quotas, I/O, data transfer	slurm, docs
SEC	IAM, access control, compliance	rbac, docs
FAC	Cooling, BMS/DCIM, rack health, alarms	facility, telemetry, docs
ARCH	Topology, hardware specs, capacity planning	topology, inventory, docs
AIOPS	Anomaly detection, predictive maintenance	telemetry, docs
DOCS	Docs retrieval, tutorials, FAQs, policies	docs

Dataset split (extended 2026-05-02, first frozen 2026-03-21): - Dev: 53 tasks (~75%) — stratified by QCAT × role × difficulty - Test: 18 tasks (~25%) — held-out, run exactly once at end of paper development - Single-task strata (DATA/FAC/ARCH/DOCS and all RES/DES strata) are dev-only

8. Configuration System¶

Scoring profiles (benchmark/configs/scoring_profiles.yaml): - alpha0_minimal: outcome only (1.0) - alpha1_grounding: outcome + grounding (0.5/0.5) - default_hpc_v01: full seven-dimension weighted profile

Tool catalog (benchmark/configs/hpc_tool_catalog.yaml): - 16 tool methods across 5 tool families - Each method: description, parameters, role_visibility (which roles can call it), dangerous_args (conditions that trigger hard-fail)

RBAC policies (benchmark/environments/env_*/rbac_policy.yaml): - Per-environment, per-role: allowed_tools, partition_access, access_tiers - Schema version: v1.1

9. External System Integrations¶

System	Integration point	Required?
OpenAI / Azure OpenAI	openai_adapter.py — reads `OPENAI_API_KEY` / Azure env vars	No (direct_qa works without)
Anthropic	anthropic_adapter.py — reads `ANTHROPIC_API_KEY`	No
MCP server	mcp_adapter.py — stdio/SSE	No
Langfuse	langfuse_exporter.py — reads `LANGFUSE_*` env vars	No (`--langfuse` flag)
vLLM / OpenRouter	OpenAIAdapter with `OPENAI_BASE_URL` env var override	No (zero code change)
Zenodo	Dataset DOI archival (post-submission)	No

To add an open-weight baseline via vLLM or OpenRouter:

export OPENAI_BASE_URL=http://localhost:8000/v1  # vLLM
export OPENAI_API_KEY=dummy
make run-all-openai MODEL=meta-llama/Llama-3.1-8B-Instruct

10. CLI Command Reference (Summary)¶

Full reference: docs/reference/commands.md

Command	Description
`aobench validate benchmark`	Validate all task specs and environment bundles
`aobench run task TASK_ID`	Run one task with given adapter and environment
`aobench run all`	Run all dev-split tasks
`aobench report json`	Generate JSON summary report for a run
`aobench report html`	Generate self-contained HTML report
`aobench report slices`	Role × QCAT stratification report
`aobench compare RUN_A RUN_B`	Diff two run directories
`aobench robustness task TASK_ID`	Compute pass^k for one task
`aobench robustness all`	Compute pass^k across all tasks
`aobench clear run RUN_DIR`	Compute CLEAR scorecard for a run
`aobench lite select`	Run AOBench-Lite 3-stage task selection

11. Architecture Diagrams¶

Visual companion to sections 1–11 above. All diagrams reflect the implemented system (Alpha-0 / v0.1).

11.1 System Overview¶

graph TB
    subgraph CLI["CLI Layer (aobench)"]
        RUN["aobench run task/all"]
        VAL["aobench validate benchmark"]
        REP["aobench report json/html/slices"]
        CMP["aobench compare runs"]
        ROB["aobench robustness task"]
    end

    subgraph BENCH["Benchmark Dataset (benchmark/)"]
        TASKS["tasks/specs/*.json\n(12 TaskSpecs)"]
        ENVS["environments/env_01…05/\n(5 Snapshots)"]
        CFGS["configs/\nscoring_profiles.yaml\ntool_registry.yaml"]
    end

    subgraph CORE["Core Pipeline (src/aobench/)"]
        LOADER["Loaders\nTaskLoader · EnvLoader\nBenchmarkRegistry"]
        RUNNER["BenchmarkRunner"]
        ADAPTER["Adapter\ndirect_qa | openai"]
        TOOLS["ToolRegistry\n+ Mock Tools"]
        SCORERS["Scoring Engine\nAggregateScorer"]
        WRITER["TraceWriter"]
    end

    subgraph ARTIFACTS["Runtime Artifacts (data/runs/<run_id>/)"]
        TRACE["traces/<task_id>_trace.json"]
        RESULT["results/<task_id>_result.json"]
        SUMMARY["run_summary.json"]
        HTML["report.html"]
    end

    RUN --> RUNNER
    VAL --> LOADER
    REP --> SUMMARY
    REP --> HTML
    CMP --> RESULT
    ROB --> RUNNER

    BENCH --> LOADER
    LOADER --> RUNNER
    RUNNER --> ADAPTER
    RUNNER --> TOOLS
    ADAPTER --> TOOLS
    RUNNER --> SCORERS
    RUNNER --> WRITER
    WRITER --> TRACE
    WRITER --> RESULT
    REP --> SUMMARY

11.2 Execution Flow (Single Task Run)¶

flowchart TD
    A([CLI: aobench run task]) --> B[BenchmarkRunner.run]

    B --> C1[TaskLoader.load_task\ntask_id → TaskSpec]
    B --> C2[EnvironmentLoader.load_environment\nenv_id → EnvironmentBundle]

    C1 --> D[Build ToolRegistry\nfor role + allowed_tools]
    C2 --> D

    D --> E[ExecutionContext\ntask + env + tools + run_id]

    E --> F{Adapter}

    subgraph FA["DirectQAAdapter"]
        F1[Return placeholder answer\nno tool calls]
    end

    subgraph OA["OpenAIAdapter"]
        O1[Build system prompt\n+ tool schemas] --> O2[LLM API call]
        O2 --> O3{tool_calls\nin response?}
        O3 -- yes --> O4[ToolRegistry.call\ntool_name · method · args]
        O4 --> O5[Append TraceStep\ntool_call + observation]
        O5 --> O2
        O3 -- no / max rounds --> O6[Extract final_answer]
    end

    F -- direct_qa --> FA
    F -- openai --> OA

    FA --> G[Trace]
    OA --> G

    G --> H[TraceWriter.write_trace\n→ traces/<task_id>_trace.json]

    G --> I[AggregateScorer.score]

    subgraph SCORE["Scoring Dimensions"]
        S1[OutcomeScorer\nexact / semantic / numeric]
        S2[ToolUseScorer\ncoverage · precision · redundancy]
        S3[GroundingScorer\ntoken overlap]
        S4[GovernanceScorer\npermission violations]
        S5[EfficiencyScorer\nstep count penalty]
        S6[RobustnessScorer\nscore variance]
    end

    I --> S1 & S2 & S3 & S4 & S5 & S6
    S1 & S2 & S3 & S4 & S5 & S6 --> W[Weighted Aggregate\nper scoring_profiles.yaml]

    W --> R[BenchmarkResult\naggregate_score + DimensionScores]
    R --> J[TraceWriter.write_result\n→ results/<task_id>_result.json]

    J --> K([Return BenchmarkResult])

11.3 Component Architecture¶

graph LR
    subgraph Schemas["schemas/"]
        TS[TaskSpec]
        ES[EnvironmentBundle]
        TR[Trace + TraceStep]
        TC[ToolCall + Observation]
        BR[BenchmarkResult\nDimensionScores]
        SC[ScoringConfig\nWeightProfile]
    end

    subgraph Loaders["loaders/"]
        TL[TaskLoader]
        EL[EnvironmentLoader]
        REG[BenchmarkRegistry]
    end

    subgraph Adapters["adapters/"]
        BA[BaseAdapter]
        DQA[DirectQAAdapter]
        OAI[OpenAIAdapter]
    end

    subgraph Runners["runners/"]
        CTX[ExecutionContext]
        RUN[BenchmarkRunner]
        TW[TraceWriter]
    end

    subgraph Tools["tools/"]
        BT[BaseTool]
        SL[MockSlurmTool\nquery_jobs · job_details\nlist_nodes · list_partitions]
        DO[MockDocsTool\nretrieve · list_docs]
        RB[MockRBACTool\ncheck · list_permissions]
        TE[MockTelemetryTool\nquery_memory_events · list_metrics]
        FA[MockFacilityTool\nquery_node_power · query_cluster_energy\nquery_rack_telemetry · list_inventory]
        TR2[ToolRegistry\nenforce allowed_tools]
    end

    subgraph Scorers["scorers/"]
        BS[BaseScorer]
        OS[OutcomeScorer]
        TUS[ToolUseScorer]
        GRS[GroundingScorer]
        GOS[GovernanceScorer]
        EFS[EfficiencyScorer]
        RBS[RobustnessScorer]
        AGG[AggregateScorer]
    end

    subgraph Reports["reports/"]
        JR[JsonReport]
        HR[HtmlReport]
        SL2[Slices\nrole × category matrix]
    end

    TL --> TS
    EL --> ES
    REG --> TL & EL

    BA --> DQA & OAI
    BT --> SL & DO & RB & TE & FA
    SL & DO & RB & TE & FA --> TR2

    RUN --> REG
    RUN --> CTX
    RUN --> TR2
    CTX --> BA
    BA --> TR
    TR --> TW
    TR --> AGG

    BS --> OS & TUS & GRS & GOS & EFS & RBS
    OS & TUS & GRS & GOS & EFS & RBS --> AGG
    AGG --> BR
    BR --> TW

    TW --> JR & HR & SL2

11.4 Environment Snapshot Structure¶

graph TD
    subgraph ENV["benchmark/environments/env_NN/"]
        META["metadata.yaml\nenv_id · snapshot · cluster\nroles · categories · status"]
        SLURM["slurm/\nslurm_state.json\njob_details.json"]
        TELEM["telemetry/\nmemory_events.csv\ntelemetry_timeseries.parquet"]
        DOCS["docs/\n*.md — HPC documentation"]
        POL["policy/\nrbac_policy.yaml"]
        INC["incidents/\nincident_metadata.json"]
        POWER["power/\nnode_power.csv\nrack_telemetry.csv\ninventory.json"]
    end

    META --> ENV_BUNDLE[EnvironmentBundle]
    SLURM --> MockSlurmTool
    TELEM --> MockTelemetryTool
    DOCS --> MockDocsTool
    POL --> MockRBACTool
    POWER --> MockFacilityTool

11.5 Scoring Pipeline¶

flowchart LR
    T[Trace] --> OS
    T --> TUS
    T --> GRS
    T --> GOS
    T --> EFS

    TASK[TaskSpec\ngold_answer\ngold_evidence_refs\nhard_fail_conditions] --> OS & TUS & GRS & GOS

    OS["OutcomeScorer\nexact_match\nsemantic_match\nnumeric\n→ 0–1"] --> AGG
    TUS["ToolUseScorer\ncoverage\nprecision\nno-redundancy\n→ 0–1"] --> AGG
    GRS["GroundingScorer\ntoken overlap\nobs vs answer\n→ 0–1"] --> AGG
    GOS["GovernanceScorer\npermission violations\n-0.25 per violation\n→ 0–1"] --> AGG
    EFS["EfficiencyScorer\nstep count linear\n≤5 → 1.0, ≥20 → 0.0\n→ 0–1"] --> AGG

    PROFILE["WeightProfile\n(scoring_profiles.yaml)\ndefault_hpc_v01\nalpha1_grounding\nalpha0_minimal"] --> AGG

    AGG["AggregateScorer\nweighted sum\nhard-fail check"] --> BR

    BR["BenchmarkResult\naggregate_score\nDimensionScores\nhard_fail"]

11.6 Role-Based Access Control Flow¶

flowchart TD
    TASK[TaskSpec\nrole: scientific_user\nallowed_tools: slurm · docs · telemetry] --> RUN[BenchmarkRunner]

    RUN --> TR2[ToolRegistry\nfiltered to allowed_tools]

    TR2 --> CALL{Tool Call}

    CALL -- "slurm.query_jobs()" --> SLURM[MockSlurmTool]
    CALL -- "docs.retrieve()" --> DOCS[MockDocsTool]
    CALL -- "facility.query_power()" --> DENY[ToolResult\npermission_denied=True]

    SLURM --> RBAC{Role Check}
    RBAC -- "scientific_user\n→ own jobs only" --> OWN[Filtered results\nown user's jobs]
    RBAC -- "sysadmin\n→ all jobs" --> ALL[All job results]

    DENY --> GOS[GovernanceScorer\npenalize violation]
    OWN --> TRACE[TraceStep observation]
    ALL --> TRACE

11.7 CLI Command Map¶

graph TD
    CLI([aobench]) --> RUN[run]
    CLI --> VAL[validate]
    CLI --> REP[report]
    CLI --> CMP[compare]
    CLI --> ROB[robustness]

    RUN --> RT["run task\n--task ID --env ID\n--adapter direct_qa|openai:gpt-4o"]
    RUN --> RA["run all\n--adapter NAME"]

    VAL --> VB["validate benchmark\n--benchmark DIR"]

    REP --> RJ["report json RUN_DIR\n→ run_summary.json"]
    REP --> RH["report html RUN_DIR\n→ report.html"]
    REP --> RS["report slices RUN_DIR\n→ role×category table"]

    CMP --> CR["compare runs RUN_A RUN_B\n→ diff JSON"]

    ROB --> RBT["robustness task\n--task ID --env ID\n--adapter NAME --n N\n→ mean · std · robustness_score"]